PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g03600.1
Common NameLR48_Vigan06g013700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 194aa    MW: 21458.2 Da    PI: 8.4598
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g03600.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.1e-183684355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  Vang07g03600.1 36 YRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFPTPEMAARAHDVAALTIKG 84
                    9****998.**********854...6**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-313593IPR001471AP2/ERF domain
SMARTSM003802.1E-363598IPR001471AP2/ERF domain
PROSITE profilePS5103223.4593592IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-213593IPR016177DNA-binding domain
CDDcd000183.28E-323694No hitNo description
PfamPF008478.0E-123684IPR001471AP2/ERF domain
PRINTSPR003672.0E-103647IPR001471AP2/ERF domain
PRINTSPR003672.0E-105874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
LNLTGSHMEE KKRNEADEAK KKKNKKRESE EKQRMYRGVR MRQWGKWVSE IREPKKKSRI  60
WLGTFPTPEM AARAHDVAAL TIKGTSAFLN FPELASYLPR PPTTSPKDIQ AAAAEAAALN  120
CDAQPQARAQ ARAQAQIMPD GDDAFLDLPD LLADSSQSAG GFGYSASWFV AAPEHLDSAF  180
RLDDPPFPWD SSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-163292263ATERF1
3gcc_A3e-163292263ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00436DAPTransfer from AT4G16750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520020.11e-100PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9LYD32e-46DREB3_ARATH; Dehydration-responsive element-binding protein 3
SwissprotQ9SUK82e-46ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLA0A0L9UQ361e-134A0A0L9UQ36_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T5D11e-134A0A0S3T5D1_PHAAN; Uncharacterized protein
STRINGGLYMA11G03790.17e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-42ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]